Family: Trans-New Guinea (88 languages)

 Genus: Angan (5 languages)
Ampeeli
Angaatiha
Baruya
Hamtai
Menya
 Genus: Asmat-Kamoro (2 languages)
Asmat
Kamoro
 Genus: Awju-Dumut (5 languages)
Aghu
Kombai
Korowai
Pisa
Wambon
 Genus: Binanderean (5 languages)
Binandere
Guhu-Samane
Korafe
Orokaiva
Suena
 Genus: Chimbu (8 languages)
Chuave
Golin
Kaugel
Kuman
Maring
Salt-Yui
Tabare
Wahgi
 Genus: Dani (2 languages)
Dani (Lower Grand Valley)
Yali
 Genus: Duna
Duna
 Genus: Eastern Highlands (14 languages)
Agarabi
Auyana
Awa
Benabena
Binumarien
Fore
Gadsup
Gahuku
Hua
Kamano-Kafe
Siane
Tairora
Usarufa
Yagaria
 Genus: Engan (3 languages)
Enga
Kewa
Kyaka
 Genus: Finisterre-Huon (8 languages)
Burum
Kâte
Nabak
Nankina
Ono
Rawa
Selepet
Wantoat
 Genus: Goilalan (2 languages)
Kunimaipa
Weri
 Genus: Koiarian (5 languages)
Barai
Koiali (Mountain)
Koiari
Koita
Ömie
 Genus: Kutubuan
Foe
 Genus: Madang (13 languages)
Amele
Anamuxra
Bau
Bongu
Garus
Kalam
Kobon
Mugil
Nend
Siroi
Tauya
Usan
Waskia
 Genus: Mailuan
Magi
 Genus: Mairasi-Tanahmerah
Mairasi
 Genus: Mek (4 languages)
Eipo
Ketengban
Una
Yale (Kosarek)
 Genus: Ok (4 languages)
Kati (in West Papua, Indonesia)
Mian
Telefol
Tifal
 Genus: Wissel Lakes-Kemandoga (2 languages)
Ekari
Moni
 Genus: Fasu
Fasu
 Genus: Momuna
Momuna